NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,626.3 |
| Mean read quality |
11.1 |
| Median read length |
4,550.0 |
| Median read quality |
12.0 |
| Number of reads |
5,282.0 |
| Read length N50 |
5,302.0 |
| STDEV read length |
1,815.6 |
| Total bases |
24,435,878.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5282 (100.0%) 24.4Mb |
| >Q7 |
5276 (99.9%) 24.4Mb |
| >Q10 |
4683 (88.7%) 22.2Mb |
| >Q12 |
2604 (49.3%) 12.6Mb |
| >Q15 |
20 (0.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (7038) |
| 2 |
15.9 (309) |
| 3 |
15.8 (3564) |
| 4 |
15.7 (4977) |
| 5 |
15.6 (3468) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14495 (12.4) |
| 2 |
13700 (13.6) |
| 3 |
12025 (13.0) |
| 4 |
11012 (11.3) |
| 5 |
9662 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot