NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,248.5 |
| Mean read quality |
10.9 |
| Median read length |
2,243.5 |
| Median read quality |
12.3 |
| Number of reads |
10,270.0 |
| Read length N50 |
2,456.0 |
| STDEV read length |
1,545.4 |
| Total bases |
23,091,977.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10269 (100.0%) 23.0Mb |
| >Q7 |
10161 (98.9%) 22.8Mb |
| >Q10 |
8100 (78.9%) 18.8Mb |
| >Q12 |
5660 (55.1%) 13.3Mb |
| >Q15 |
618 (6.0%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (3156) |
| 2 |
17.5 (2511) |
| 3 |
17.3 (2822) |
| 4 |
17.2 (2264) |
| 5 |
17.0 (2800) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
130500 (4.5) |
| 2 |
24842 (7.3) |
| 3 |
21155 (7.9) |
| 4 |
8644 (7.4) |
| 5 |
8549 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot