NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,651.3 |
| Mean read quality |
11.8 |
| Median read length |
3,947.0 |
| Median read quality |
13.2 |
| Number of reads |
1,077.0 |
| Read length N50 |
4,151.0 |
| STDEV read length |
1,423.9 |
| Total bases |
3,932,497.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1077 (100.0%) 3.9Mb |
| >Q7 |
1073 (99.6%) 3.9Mb |
| >Q10 |
947 (87.9%) 3.7Mb |
| >Q12 |
760 (70.6%) 3.0Mb |
| >Q15 |
154 (14.3%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (3288) |
| 2 |
17.7 (4009) |
| 3 |
17.6 (3364) |
| 4 |
17.6 (3368) |
| 5 |
17.4 (3621) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7515 (10.6) |
| 2 |
7493 (11.1) |
| 3 |
6695 (10.3) |
| 4 |
6665 (13.4) |
| 5 |
6650 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot