NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,278.7 |
| Mean read quality |
11.0 |
| Median read length |
3,197.0 |
| Median read quality |
12.2 |
| Number of reads |
346,008.0 |
| Read length N50 |
3,586.0 |
| STDEV read length |
1,185.9 |
| Total bases |
1,134,443,586.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
346008 (100.0%) 1134.4Mb |
| >Q7 |
344966 (99.7%) 1131.5Mb |
| >Q10 |
280743 (81.1%) 934.9Mb |
| >Q12 |
184325 (53.3%) 624.8Mb |
| >Q15 |
23359 (6.8%) 81.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.5 (1801) |
| 2 |
18.4 (4006) |
| 3 |
18.3 (4812) |
| 4 |
18.3 (3067) |
| 5 |
18.3 (4929) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12384 (9.7) |
| 2 |
11497 (11.5) |
| 3 |
11452 (11.3) |
| 4 |
11270 (11.7) |
| 5 |
11144 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot