NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,457.9 |
| Mean read quality |
11.0 |
| Median read length |
3,537.0 |
| Median read quality |
11.9 |
| Number of reads |
1,177.0 |
| Read length N50 |
3,887.0 |
| STDEV read length |
1,200.2 |
| Total bases |
4,069,982.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1177 (100.0%) 4.1Mb |
| >Q7 |
1177 (100.0%) 4.1Mb |
| >Q10 |
1036 (88.0%) 3.7Mb |
| >Q12 |
548 (46.6%) 2.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (3964) |
| 2 |
14.7 (3436) |
| 3 |
14.7 (4611) |
| 4 |
14.7 (3468) |
| 5 |
14.5 (2967) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8508 (11.6) |
| 2 |
8294 (11.9) |
| 3 |
7583 (13.6) |
| 4 |
6741 (11.5) |
| 5 |
6650 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot