NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,569.5 |
| Mean read quality |
10.4 |
| Median read length |
3,405.0 |
| Median read quality |
11.6 |
| Number of reads |
7,426.0 |
| Read length N50 |
4,091.0 |
| STDEV read length |
1,607.2 |
| Total bases |
26,506,775.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7426 (100.0%) 26.5Mb |
| >Q7 |
7366 (99.2%) 26.4Mb |
| >Q10 |
5723 (77.1%) 21.3Mb |
| >Q12 |
2992 (40.3%) 11.3Mb |
| >Q15 |
24 (0.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (2612) |
| 2 |
15.6 (3837) |
| 3 |
15.5 (3031) |
| 4 |
15.5 (5410) |
| 5 |
15.5 (4467) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13086 (6.9) |
| 2 |
11935 (13.0) |
| 3 |
11712 (10.3) |
| 4 |
10958 (8.7) |
| 5 |
10066 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot