NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,027.3 |
| Mean read quality |
10.7 |
| Median read length |
3,058.5 |
| Median read quality |
12.1 |
| Number of reads |
2,248.0 |
| Read length N50 |
3,316.0 |
| STDEV read length |
1,045.3 |
| Total bases |
6,805,301.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2230 (99.2%) 6.8Mb |
| >Q7 |
2183 (97.1%) 6.7Mb |
| >Q10 |
1901 (84.6%) 5.9Mb |
| >Q12 |
1197 (53.2%) 3.8Mb |
| >Q15 |
8 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (3107) |
| 2 |
15.9 (2477) |
| 3 |
15.6 (2522) |
| 4 |
15.3 (4436) |
| 5 |
15.3 (2152) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6598 (13.5) |
| 2 |
6289 (12.8) |
| 3 |
6270 (11.9) |
| 4 |
6113 (13.6) |
| 5 |
6036 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot