NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,531.3 |
| Mean read quality |
9.4 |
| Median read length |
2,661.0 |
| Median read quality |
10.3 |
| Number of reads |
1,271.0 |
| Read length N50 |
3,720.0 |
| STDEV read length |
1,898.2 |
| Total bases |
3,217,270.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1271 (100.0%) 3.2Mb |
| >Q7 |
1218 (95.8%) 3.1Mb |
| >Q10 |
689 (54.2%) 2.1Mb |
| >Q12 |
443 (34.9%) 1.5Mb |
| >Q15 |
42 (3.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (3046) |
| 2 |
17.5 (4428) |
| 3 |
17.3 (3047) |
| 4 |
17.1 (3879) |
| 5 |
17.1 (4439) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11429 (7.9) |
| 2 |
11142 (8.8) |
| 3 |
11081 (8.1) |
| 4 |
10955 (7.6) |
| 5 |
10099 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot