NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,411.7 |
| Mean read quality |
11.2 |
| Median read length |
4,369.0 |
| Median read quality |
12.4 |
| Number of reads |
10,981.0 |
| Read length N50 |
4,942.0 |
| STDEV read length |
1,557.9 |
| Total bases |
48,444,554.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10981 (100.0%) 48.4Mb |
| >Q7 |
10966 (99.9%) 48.4Mb |
| >Q10 |
9360 (85.2%) 41.9Mb |
| >Q12 |
6373 (58.0%) 29.0Mb |
| >Q15 |
156 (1.4%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (163) |
| 2 |
16.1 (4879) |
| 3 |
16.0 (4181) |
| 4 |
15.9 (6308) |
| 5 |
15.8 (6006) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10312 (9.5) |
| 2 |
10208 (10.6) |
| 3 |
10190 (10.3) |
| 4 |
10187 (11.9) |
| 5 |
10185 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot