NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,322.3 |
| Mean read quality |
10.2 |
| Median read length |
2,577.5 |
| Median read quality |
11.6 |
| Number of reads |
918.0 |
| Read length N50 |
3,139.0 |
| STDEV read length |
1,353.7 |
| Total bases |
2,131,858.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
918 (100.0%) 2.1Mb |
| >Q7 |
907 (98.8%) 2.1Mb |
| >Q10 |
633 (69.0%) 1.7Mb |
| >Q12 |
401 (43.7%) 1.1Mb |
| >Q15 |
26 (2.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (4341) |
| 2 |
16.9 (1453) |
| 3 |
16.8 (1131) |
| 4 |
16.7 (2839) |
| 5 |
16.4 (2586) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7353 (10.8) |
| 2 |
6063 (12.2) |
| 3 |
5675 (10.6) |
| 4 |
5290 (13.1) |
| 5 |
5126 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot