NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,378.4 |
| Mean read quality |
11.0 |
| Median read length |
3,382.0 |
| Median read quality |
11.8 |
| Number of reads |
523,196.0 |
| Read length N50 |
3,727.0 |
| STDEV read length |
1,155.2 |
| Total bases |
1,767,550,591.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
523195 (100.0%) 1767.5Mb |
| >Q7 |
522857 (99.9%) 1766.5Mb |
| >Q10 |
466149 (89.1%) 1597.5Mb |
| >Q12 |
225695 (43.1%) 796.8Mb |
| >Q15 |
85 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (2321) |
| 2 |
16.3 (3755) |
| 3 |
16.3 (203) |
| 4 |
16.2 (209) |
| 5 |
16.2 (2220) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13186 (11.3) |
| 2 |
13083 (9.3) |
| 3 |
12567 (12.5) |
| 4 |
12460 (12.6) |
| 5 |
12370 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot