NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,018.2 |
| Mean read quality |
11.1 |
| Median read length |
3,063.0 |
| Median read quality |
12.6 |
| Number of reads |
7,583.0 |
| Read length N50 |
3,348.0 |
| STDEV read length |
1,092.5 |
| Total bases |
22,886,961.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7583 (100.0%) 22.9Mb |
| >Q7 |
7519 (99.2%) 22.8Mb |
| >Q10 |
6198 (81.7%) 19.3Mb |
| >Q12 |
4508 (59.4%) 14.2Mb |
| >Q15 |
480 (6.3%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (1305) |
| 2 |
17.9 (3705) |
| 3 |
17.3 (1150) |
| 4 |
17.2 (907) |
| 5 |
17.2 (2545) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12181 (7.4) |
| 2 |
10998 (9.7) |
| 3 |
9176 (11.9) |
| 4 |
9111 (11.4) |
| 5 |
8353 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot