NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,315.8 |
| Mean read quality |
9.2 |
| Median read length |
2,364.0 |
| Median read quality |
10.1 |
| Number of reads |
225.0 |
| Read length N50 |
3,580.0 |
| STDEV read length |
1,917.0 |
| Total bases |
521,056.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
225 (100.0%) 0.5Mb |
| >Q7 |
213 (94.7%) 0.5Mb |
| >Q10 |
119 (52.9%) 0.4Mb |
| >Q12 |
58 (25.8%) 0.2Mb |
| >Q15 |
3 (1.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (2956) |
| 2 |
15.4 (2543) |
| 3 |
15.0 (3085) |
| 4 |
15.0 (1658) |
| 5 |
14.9 (3098) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9104 (13.0) |
| 2 |
8866 (11.2) |
| 3 |
7616 (10.5) |
| 4 |
7508 (13.2) |
| 5 |
7209 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot