NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,079.4 |
| Mean read quality |
10.4 |
| Median read length |
2,197.0 |
| Median read quality |
12.1 |
| Number of reads |
3,664.0 |
| Read length N50 |
2,585.0 |
| STDEV read length |
1,121.3 |
| Total bases |
7,619,074.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3663 (100.0%) 7.6Mb |
| >Q7 |
3590 (98.0%) 7.6Mb |
| >Q10 |
2667 (72.8%) 6.3Mb |
| >Q12 |
1900 (51.9%) 4.7Mb |
| >Q15 |
151 (4.1%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (3214) |
| 2 |
17.7 (3027) |
| 3 |
17.7 (2424) |
| 4 |
17.6 (3623) |
| 5 |
17.2 (2304) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8686 (7.3) |
| 2 |
8286 (8.8) |
| 3 |
7322 (13.5) |
| 4 |
7070 (13.2) |
| 5 |
6905 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot