NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,280.8 |
| Mean read quality |
11.5 |
| Median read length |
5,296.5 |
| Median read quality |
12.8 |
| Number of reads |
1,370.0 |
| Read length N50 |
5,747.0 |
| STDEV read length |
1,749.4 |
| Total bases |
7,234,669.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1370 (100.0%) 7.2Mb |
| >Q7 |
1369 (99.9%) 7.2Mb |
| >Q10 |
1220 (89.1%) 6.5Mb |
| >Q12 |
913 (66.6%) 4.9Mb |
| >Q15 |
22 (1.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (5202) |
| 2 |
16.0 (7902) |
| 3 |
15.8 (432) |
| 4 |
15.7 (4934) |
| 5 |
15.6 (4797) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9804 (8.8) |
| 2 |
9734 (15.1) |
| 3 |
9710 (11.4) |
| 4 |
9699 (14.7) |
| 5 |
9664 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot