NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,227.6 |
| Mean read quality |
11.0 |
| Median read length |
3,110.5 |
| Median read quality |
12.1 |
| Number of reads |
594.0 |
| Read length N50 |
3,421.0 |
| STDEV read length |
1,374.1 |
| Total bases |
1,917,224.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
594 (100.0%) 1.9Mb |
| >Q7 |
594 (100.0%) 1.9Mb |
| >Q10 |
505 (85.0%) 1.7Mb |
| >Q12 |
309 (52.0%) 1.1Mb |
| >Q15 |
4 (0.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (3093) |
| 2 |
15.4 (3084) |
| 3 |
15.3 (3124) |
| 4 |
15.2 (5081) |
| 5 |
14.9 (3111) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5868 (13.4) |
| 2 |
5854 (10.7) |
| 3 |
5851 (12.4) |
| 4 |
5848 (12.7) |
| 5 |
5835 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot