NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,015.5 |
| Mean read quality |
10.3 |
| Median read length |
2,960.0 |
| Median read quality |
12.1 |
| Number of reads |
1,012.0 |
| Read length N50 |
3,923.0 |
| STDEV read length |
1,972.2 |
| Total bases |
3,051,641.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1012 (100.0%) 3.1Mb |
| >Q7 |
986 (97.4%) 3.0Mb |
| >Q10 |
714 (70.6%) 2.5Mb |
| >Q12 |
521 (51.5%) 1.9Mb |
| >Q15 |
21 (2.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (1650) |
| 2 |
16.3 (1864) |
| 3 |
16.2 (2664) |
| 4 |
15.8 (2394) |
| 5 |
15.8 (3148) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17164 (7.6) |
| 2 |
12110 (5.8) |
| 3 |
10143 (10.5) |
| 4 |
10126 (12.2) |
| 5 |
10112 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot