NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,880.1 |
| Mean read quality |
11.0 |
| Median read length |
3,769.0 |
| Median read quality |
12.4 |
| Number of reads |
4,533.0 |
| Read length N50 |
4,439.0 |
| STDEV read length |
1,631.6 |
| Total bases |
17,588,526.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4533 (100.0%) 17.6Mb |
| >Q7 |
4511 (99.5%) 17.5Mb |
| >Q10 |
3735 (82.4%) 15.2Mb |
| >Q12 |
2623 (57.9%) 10.8Mb |
| >Q15 |
133 (2.9%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (2865) |
| 2 |
16.9 (1703) |
| 3 |
16.9 (2885) |
| 4 |
16.7 (4049) |
| 5 |
16.3 (2780) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12468 (8.0) |
| 2 |
10734 (9.1) |
| 3 |
10438 (6.8) |
| 4 |
10276 (7.6) |
| 5 |
10122 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot