NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,518.3 |
| Mean read quality |
11.2 |
| Median read length |
5,436.0 |
| Median read quality |
12.0 |
| Number of reads |
4,477.0 |
| Read length N50 |
6,585.0 |
| STDEV read length |
2,415.4 |
| Total bases |
24,705,410.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4476 (100.0%) 24.7Mb |
| >Q7 |
4474 (99.9%) 24.7Mb |
| >Q10 |
4007 (89.5%) 22.5Mb |
| >Q12 |
2267 (50.6%) 13.1Mb |
| >Q15 |
15 (0.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (1077) |
| 2 |
15.5 (8529) |
| 3 |
15.4 (7037) |
| 4 |
15.2 (7934) |
| 5 |
15.2 (5028) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18596 (13.5) |
| 2 |
12432 (14.1) |
| 3 |
12245 (10.9) |
| 4 |
11801 (12.7) |
| 5 |
11792 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot