NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
599.1 |
| Mean read quality |
7.6 |
| Median read length |
155.0 |
| Median read quality |
7.9 |
| Number of reads |
1,321.0 |
| Read length N50 |
3,541.0 |
| STDEV read length |
1,258.1 |
| Total bases |
791,372.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1321 (100.0%) 0.8Mb |
| >Q7 |
1321 (100.0%) 0.8Mb |
| >Q10 |
120 (9.1%) 0.4Mb |
| >Q12 |
38 (2.9%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.3 (1942) |
| 2 |
14.2 (2398) |
| 3 |
13.8 (3910) |
| 4 |
13.4 (2921) |
| 5 |
13.4 (4510) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7911 (8.3) |
| 2 |
7792 (9.0) |
| 3 |
7769 (11.0) |
| 4 |
7416 (10.0) |
| 5 |
6761 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot