NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,920.5 |
| Mean read quality |
10.9 |
| Median read length |
2,905.0 |
| Median read quality |
12.1 |
| Number of reads |
308,672.0 |
| Read length N50 |
3,188.0 |
| STDEV read length |
960.6 |
| Total bases |
901,485,767.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
308672 (100.0%) 901.5Mb |
| >Q7 |
307278 (99.5%) 898.1Mb |
| >Q10 |
247511 (80.2%) 737.3Mb |
| >Q12 |
161781 (52.4%) 491.3Mb |
| >Q15 |
21786 (7.1%) 68.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (3404) |
| 2 |
18.1 (2726) |
| 3 |
18.0 (2906) |
| 4 |
18.0 (2915) |
| 5 |
17.9 (2998) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11420 (7.2) |
| 2 |
11154 (9.9) |
| 3 |
10624 (7.2) |
| 4 |
10149 (8.8) |
| 5 |
9569 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot