NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,386.9 |
| Mean read quality |
11.9 |
| Median read length |
4,193.0 |
| Median read quality |
13.1 |
| Number of reads |
7,810.0 |
| Read length N50 |
4,764.0 |
| STDEV read length |
1,543.5 |
| Total bases |
34,261,316.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7810 (100.0%) 34.3Mb |
| >Q7 |
7792 (99.8%) 34.2Mb |
| >Q10 |
7177 (91.9%) 31.7Mb |
| >Q12 |
5700 (73.0%) 25.5Mb |
| >Q15 |
473 (6.1%) 1.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (6593) |
| 2 |
16.9 (3441) |
| 3 |
16.9 (2285) |
| 4 |
16.6 (2742) |
| 5 |
16.5 (3239) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13908 (8.7) |
| 2 |
9464 (13.8) |
| 3 |
9422 (14.1) |
| 4 |
9418 (14.1) |
| 5 |
9414 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot