NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,562.4 |
| Mean read quality |
10.9 |
| Median read length |
3,526.0 |
| Median read quality |
12.3 |
| Number of reads |
6,644.0 |
| Read length N50 |
3,958.0 |
| STDEV read length |
1,292.5 |
| Total bases |
23,668,582.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6634 (99.8%) 23.6Mb |
| >Q7 |
6523 (98.2%) 23.3Mb |
| >Q10 |
5631 (84.8%) 20.3Mb |
| >Q12 |
3725 (56.1%) 13.6Mb |
| >Q15 |
33 (0.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (3042) |
| 2 |
15.9 (2980) |
| 3 |
15.8 (2843) |
| 4 |
15.8 (3217) |
| 5 |
15.7 (4786) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9971 (8.0) |
| 2 |
7617 (13.6) |
| 3 |
7583 (11.6) |
| 4 |
7578 (11.9) |
| 5 |
7535 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot