NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,149.7 |
| Mean read quality |
9.8 |
| Median read length |
2,317.0 |
| Median read quality |
11.2 |
| Number of reads |
837.0 |
| Read length N50 |
3,120.0 |
| STDEV read length |
1,483.3 |
| Total bases |
1,799,288.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
836 (99.9%) 1.8Mb |
| >Q7 |
811 (96.9%) 1.8Mb |
| >Q10 |
510 (60.9%) 1.4Mb |
| >Q12 |
353 (42.2%) 1.0Mb |
| >Q15 |
25 (3.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (2482) |
| 2 |
17.5 (3492) |
| 3 |
17.3 (3299) |
| 4 |
17.3 (3124) |
| 5 |
17.2 (2392) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8620 (9.3) |
| 2 |
6830 (7.4) |
| 3 |
6391 (11.5) |
| 4 |
6242 (13.5) |
| 5 |
6112 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot