NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,380.0 |
| Mean read quality |
12.1 |
| Median read length |
3,214.5 |
| Median read quality |
13.3 |
| Number of reads |
26,558.0 |
| Read length N50 |
3,670.0 |
| STDEV read length |
1,272.4 |
| Total bases |
89,765,847.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26558 (100.0%) 89.8Mb |
| >Q7 |
26526 (99.9%) 89.7Mb |
| >Q10 |
24738 (93.1%) 84.2Mb |
| >Q12 |
20195 (76.0%) 69.7Mb |
| >Q15 |
2273 (8.6%) 8.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (2841) |
| 2 |
17.2 (3513) |
| 3 |
17.1 (2922) |
| 4 |
17.1 (2549) |
| 5 |
17.1 (6402) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9961 (12.3) |
| 2 |
9755 (13.5) |
| 3 |
9255 (12.3) |
| 4 |
9211 (12.9) |
| 5 |
9171 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot