NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,249.0 |
| Mean read quality |
11.0 |
| Median read length |
4,203.0 |
| Median read quality |
12.3 |
| Number of reads |
1,619.0 |
| Read length N50 |
4,773.0 |
| STDEV read length |
1,655.5 |
| Total bases |
6,879,108.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1619 (100.0%) 6.9Mb |
| >Q7 |
1606 (99.2%) 6.9Mb |
| >Q10 |
1376 (85.0%) 6.0Mb |
| >Q12 |
922 (56.9%) 4.0Mb |
| >Q15 |
16 (1.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2010) |
| 2 |
15.7 (4550) |
| 3 |
15.7 (7545) |
| 4 |
15.4 (776) |
| 5 |
15.4 (5320) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11384 (8.4) |
| 2 |
9109 (12.2) |
| 3 |
9070 (11.4) |
| 4 |
8981 (12.1) |
| 5 |
8797 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot