NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,312.9 |
| Mean read quality |
11.5 |
| Median read length |
3,544.0 |
| Median read quality |
12.8 |
| Number of reads |
81,680.0 |
| Read length N50 |
3,564.0 |
| STDEV read length |
856.6 |
| Total bases |
270,596,425.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
81533 (99.8%) 270.2Mb |
| >Q7 |
80634 (98.7%) 267.8Mb |
| >Q10 |
73189 (89.6%) 244.8Mb |
| >Q12 |
55123 (67.5%) 187.2Mb |
| >Q15 |
1909 (2.3%) 6.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (3445) |
| 2 |
16.7 (3817) |
| 3 |
16.6 (3275) |
| 4 |
16.5 (3664) |
| 5 |
16.5 (2494) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9472 (10.9) |
| 2 |
9152 (11.7) |
| 3 |
8952 (13.4) |
| 4 |
8846 (12.9) |
| 5 |
8576 (6.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot