NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,556.2 |
| Mean read quality |
11.4 |
| Median read length |
3,480.0 |
| Median read quality |
12.8 |
| Number of reads |
334,544.0 |
| Read length N50 |
3,818.0 |
| STDEV read length |
1,180.6 |
| Total bases |
1,189,721,298.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
334544 (100.0%) 1189.7Mb |
| >Q7 |
333500 (99.7%) 1186.4Mb |
| >Q10 |
285914 (85.5%) 1023.9Mb |
| >Q12 |
212507 (63.5%) 767.9Mb |
| >Q15 |
27329 (8.2%) 101.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (294) |
| 2 |
19.1 (398) |
| 3 |
18.7 (381) |
| 4 |
18.6 (3081) |
| 5 |
18.6 (534) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16082 (6.8) |
| 2 |
14588 (9.4) |
| 3 |
13579 (9.2) |
| 4 |
12844 (12.7) |
| 5 |
11694 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot