NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,248.6 |
| Mean read quality |
11.4 |
| Median read length |
4,128.5 |
| Median read quality |
12.9 |
| Number of reads |
1,120.0 |
| Read length N50 |
4,820.0 |
| STDEV read length |
1,750.3 |
| Total bases |
4,758,462.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1120 (100.0%) 4.8Mb |
| >Q7 |
1109 (99.0%) 4.7Mb |
| >Q10 |
982 (87.7%) 4.4Mb |
| >Q12 |
755 (67.4%) 3.4Mb |
| >Q15 |
21 (1.9%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (4414) |
| 2 |
17.2 (4440) |
| 3 |
16.9 (2907) |
| 4 |
16.9 (5354) |
| 5 |
16.8 (2970) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9084 (13.0) |
| 2 |
8872 (14.6) |
| 3 |
8854 (13.8) |
| 4 |
8781 (13.9) |
| 5 |
8779 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot