NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,114.3 |
| Mean read quality |
11.0 |
| Median read length |
3,089.0 |
| Median read quality |
11.9 |
| Number of reads |
3,820.0 |
| Read length N50 |
3,508.0 |
| STDEV read length |
1,229.4 |
| Total bases |
11,896,564.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3820 (100.0%) 11.9Mb |
| >Q7 |
3815 (99.9%) 11.9Mb |
| >Q10 |
3360 (88.0%) 10.9Mb |
| >Q12 |
1844 (48.3%) 6.2Mb |
| >Q15 |
6 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (5433) |
| 2 |
15.3 (2796) |
| 3 |
15.2 (4453) |
| 4 |
15.2 (1834) |
| 5 |
15.1 (4134) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8953 (11.6) |
| 2 |
8246 (12.4) |
| 3 |
7305 (13.2) |
| 4 |
6825 (12.9) |
| 5 |
6802 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot