NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,771.5 |
| Mean read quality |
10.7 |
| Median read length |
3,825.0 |
| Median read quality |
11.7 |
| Number of reads |
857.0 |
| Read length N50 |
4,076.0 |
| STDEV read length |
1,486.4 |
| Total bases |
3,232,150.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
857 (100.0%) 3.2Mb |
| >Q7 |
857 (100.0%) 3.2Mb |
| >Q10 |
689 (80.4%) 2.7Mb |
| >Q12 |
371 (43.3%) 1.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.8 (4068) |
| 2 |
14.6 (563) |
| 3 |
14.6 (4061) |
| 4 |
14.6 (4981) |
| 5 |
14.6 (4080) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9204 (9.8) |
| 2 |
9203 (12.4) |
| 3 |
9181 (14.4) |
| 4 |
9180 (12.6) |
| 5 |
9165 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot