NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,616.8 |
| Mean read quality |
11.0 |
| Median read length |
3,753.0 |
| Median read quality |
12.4 |
| Number of reads |
2,658.0 |
| Read length N50 |
4,460.0 |
| STDEV read length |
1,738.6 |
| Total bases |
9,613,467.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2658 (100.0%) 9.6Mb |
| >Q7 |
2645 (99.5%) 9.6Mb |
| >Q10 |
2137 (80.4%) 8.4Mb |
| >Q12 |
1525 (57.4%) 6.3Mb |
| >Q15 |
142 (5.3%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (854) |
| 2 |
17.2 (3398) |
| 3 |
17.0 (5267) |
| 4 |
16.7 (2933) |
| 5 |
16.6 (4767) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11194 (9.0) |
| 2 |
8746 (8.4) |
| 3 |
8714 (9.6) |
| 4 |
8648 (12.0) |
| 5 |
8249 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot