NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
723.3 |
| Mean read quality |
7.8 |
| Median read length |
173.0 |
| Median read quality |
8.1 |
| Number of reads |
434.0 |
| Read length N50 |
3,207.0 |
| STDEV read length |
1,282.1 |
| Total bases |
313,900.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
434 (100.0%) 0.3Mb |
| >Q7 |
394 (90.8%) 0.3Mb |
| >Q10 |
68 (15.7%) 0.2Mb |
| >Q12 |
39 (9.0%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (520) |
| 2 |
14.4 (5964) |
| 3 |
14.2 (2629) |
| 4 |
14.0 (2723) |
| 5 |
13.8 (2471) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6305 (10.4) |
| 2 |
6229 (12.1) |
| 3 |
6225 (13.0) |
| 4 |
6206 (12.4) |
| 5 |
6187 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot