NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,329.2 |
| Mean read quality |
10.9 |
| Median read length |
3,374.0 |
| Median read quality |
11.7 |
| Number of reads |
3,865.0 |
| Read length N50 |
3,701.0 |
| STDEV read length |
1,279.1 |
| Total bases |
12,867,241.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3865 (100.0%) 12.9Mb |
| >Q7 |
3860 (99.9%) 12.9Mb |
| >Q10 |
3351 (86.7%) 11.4Mb |
| >Q12 |
1568 (40.6%) 5.6Mb |
| >Q15 |
2 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (4700) |
| 2 |
15.0 (4485) |
| 3 |
15.0 (4427) |
| 4 |
15.0 (4617) |
| 5 |
14.8 (2836) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10018 (13.3) |
| 2 |
9682 (12.0) |
| 3 |
8985 (12.7) |
| 4 |
8747 (14.3) |
| 5 |
7815 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot