NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,587.1 |
| Mean read quality |
10.1 |
| Median read length |
1,833.0 |
| Median read quality |
11.7 |
| Number of reads |
15.0 |
| Read length N50 |
1,857.0 |
| STDEV read length |
972.1 |
| Total bases |
23,807.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15 (100.0%) 0.0Mb |
| >Q7 |
15 (100.0%) 0.0Mb |
| >Q10 |
11 (73.3%) 0.0Mb |
| >Q12 |
6 (40.0%) 0.0Mb |
| >Q15 |
1 (6.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.2 (1851) |
| 2 |
14.9 (1857) |
| 3 |
13.4 (1627) |
| 4 |
13.0 (2024) |
| 5 |
12.2 (2993) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3084 (7.1) |
| 2 |
2993 (12.2) |
| 3 |
2941 (10.7) |
| 4 |
2024 (13.0) |
| 5 |
1857 (14.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot