NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,241.1 |
| Mean read quality |
11.1 |
| Median read length |
3,494.0 |
| Median read quality |
12.2 |
| Number of reads |
306,367.0 |
| Read length N50 |
4,184.0 |
| STDEV read length |
1,677.0 |
| Total bases |
992,968,209.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
306367 (100.0%) 993.0Mb |
| >Q7 |
306246 (100.0%) 992.9Mb |
| >Q10 |
248933 (81.3%) 877.7Mb |
| >Q12 |
164048 (53.5%) 638.5Mb |
| >Q15 |
30699 (10.0%) 126.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (376) |
| 2 |
18.4 (2974) |
| 3 |
18.3 (1377) |
| 4 |
18.2 (7071) |
| 5 |
18.2 (4269) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12132 (9.6) |
| 2 |
11475 (10.0) |
| 3 |
11450 (12.1) |
| 4 |
10922 (8.6) |
| 5 |
10856 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot