NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,288.1 |
| Mean read quality |
11.3 |
| Median read length |
4,366.0 |
| Median read quality |
12.5 |
| Number of reads |
1,681.0 |
| Read length N50 |
4,839.0 |
| STDEV read length |
1,374.8 |
| Total bases |
7,208,268.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1681 (100.0%) 7.2Mb |
| >Q7 |
1679 (99.9%) 7.2Mb |
| >Q10 |
1479 (88.0%) 6.4Mb |
| >Q12 |
1042 (62.0%) 4.6Mb |
| >Q15 |
10 (0.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (6088) |
| 2 |
15.5 (5206) |
| 3 |
15.5 (5408) |
| 4 |
15.4 (5786) |
| 5 |
15.2 (5544) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9017 (7.3) |
| 2 |
7985 (8.7) |
| 3 |
7816 (11.5) |
| 4 |
7775 (12.3) |
| 5 |
7715 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot