NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,358.2 |
| Mean read quality |
10.9 |
| Median read length |
4,773.0 |
| Median read quality |
11.8 |
| Number of reads |
262.0 |
| Read length N50 |
5,296.0 |
| STDEV read length |
1,883.0 |
| Total bases |
1,141,856.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
262 (100.0%) 1.1Mb |
| >Q7 |
260 (99.2%) 1.1Mb |
| >Q10 |
223 (85.1%) 1.0Mb |
| >Q12 |
117 (44.7%) 0.6Mb |
| >Q15 |
4 (1.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (2548) |
| 2 |
15.5 (3889) |
| 3 |
15.2 (4284) |
| 4 |
15.1 (3560) |
| 5 |
14.7 (4897) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7351 (12.9) |
| 2 |
7308 (10.6) |
| 3 |
7302 (11.6) |
| 4 |
7278 (10.9) |
| 5 |
7275 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot