NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,310.5 |
| Mean read quality |
10.3 |
| Median read length |
3,450.0 |
| Median read quality |
12.1 |
| Number of reads |
3,088.0 |
| Read length N50 |
4,248.0 |
| STDEV read length |
1,984.2 |
| Total bases |
10,222,802.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3088 (100.0%) 10.2Mb |
| >Q7 |
3023 (97.9%) 10.2Mb |
| >Q10 |
2216 (71.8%) 8.6Mb |
| >Q12 |
1583 (51.3%) 6.4Mb |
| >Q15 |
82 (2.7%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (4674) |
| 2 |
18.8 (2947) |
| 3 |
18.4 (3035) |
| 4 |
18.0 (3280) |
| 5 |
17.6 (3708) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22650 (7.9) |
| 2 |
15018 (9.8) |
| 3 |
10111 (11.8) |
| 4 |
9524 (10.5) |
| 5 |
9244 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot