NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,842.8 |
| Mean read quality |
11.2 |
| Median read length |
3,819.0 |
| Median read quality |
12.1 |
| Number of reads |
28,291.0 |
| Read length N50 |
4,189.0 |
| STDEV read length |
1,346.8 |
| Total bases |
108,716,658.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28291 (100.0%) 108.7Mb |
| >Q7 |
28267 (99.9%) 108.6Mb |
| >Q10 |
25263 (89.3%) 98.1Mb |
| >Q12 |
15163 (53.6%) 60.1Mb |
| >Q15 |
90 (0.3%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (3757) |
| 2 |
16.2 (3287) |
| 3 |
15.9 (3410) |
| 4 |
15.8 (3773) |
| 5 |
15.8 (2346) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14758 (12.6) |
| 2 |
11198 (10.7) |
| 3 |
10468 (12.7) |
| 4 |
10383 (12.4) |
| 5 |
10306 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot