NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,111.2 |
| Mean read quality |
10.5 |
| Median read length |
4,121.0 |
| Median read quality |
12.1 |
| Number of reads |
895.0 |
| Read length N50 |
5,017.0 |
| STDEV read length |
2,113.4 |
| Total bases |
3,679,497.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
895 (100.0%) 3.7Mb |
| >Q7 |
880 (98.3%) 3.7Mb |
| >Q10 |
681 (76.1%) 3.1Mb |
| >Q12 |
469 (52.4%) 2.2Mb |
| >Q15 |
15 (1.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (4088) |
| 2 |
16.5 (3942) |
| 3 |
16.1 (7281) |
| 4 |
15.8 (4191) |
| 5 |
15.8 (4794) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9412 (13.8) |
| 2 |
9352 (6.9) |
| 3 |
8887 (13.3) |
| 4 |
8852 (11.9) |
| 5 |
8719 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot