NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,359.5 |
| Mean read quality |
11.5 |
| Median read length |
3,028.0 |
| Median read quality |
12.6 |
| Number of reads |
271,688.0 |
| Read length N50 |
3,899.0 |
| STDEV read length |
1,321.7 |
| Total bases |
912,736,441.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
271683 (100.0%) 912.7Mb |
| >Q7 |
270961 (99.7%) 911.0Mb |
| >Q10 |
243646 (89.7%) 828.8Mb |
| >Q12 |
168181 (61.9%) 584.2Mb |
| >Q15 |
8681 (3.2%) 32.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (798) |
| 2 |
17.7 (176) |
| 3 |
17.3 (2913) |
| 4 |
17.3 (3531) |
| 5 |
17.2 (5079) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13123 (10.0) |
| 2 |
12772 (13.0) |
| 3 |
12122 (12.7) |
| 4 |
11953 (14.2) |
| 5 |
11851 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot