NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,777.3 |
| Mean read quality |
11.7 |
| Median read length |
3,867.0 |
| Median read quality |
12.7 |
| Number of reads |
78,734.0 |
| Read length N50 |
4,215.0 |
| STDEV read length |
1,297.9 |
| Total bases |
297,404,036.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78733 (100.0%) 297.4Mb |
| >Q7 |
78657 (99.9%) 297.2Mb |
| >Q10 |
71684 (91.0%) 273.8Mb |
| >Q12 |
50901 (64.6%) 199.0Mb |
| >Q15 |
3932 (5.0%) 15.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (3420) |
| 2 |
17.4 (3526) |
| 3 |
17.3 (4828) |
| 4 |
17.2 (3265) |
| 5 |
17.2 (4749) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11864 (9.0) |
| 2 |
11523 (13.6) |
| 3 |
11264 (11.8) |
| 4 |
10912 (14.2) |
| 5 |
10756 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot