NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,236.8 |
| Mean read quality |
11.2 |
| Median read length |
4,189.0 |
| Median read quality |
12.4 |
| Number of reads |
34,880.0 |
| Read length N50 |
4,601.0 |
| STDEV read length |
1,364.5 |
| Total bases |
147,781,154.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
34880 (100.0%) 147.8Mb |
| >Q7 |
34807 (99.8%) 147.6Mb |
| >Q10 |
30331 (87.0%) 130.1Mb |
| >Q12 |
20537 (58.9%) 89.3Mb |
| >Q15 |
247 (0.7%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3945) |
| 2 |
16.6 (3387) |
| 3 |
16.5 (3515) |
| 4 |
16.2 (4655) |
| 5 |
16.1 (4433) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10968 (8.7) |
| 2 |
10714 (9.0) |
| 3 |
10548 (7.1) |
| 4 |
9778 (9.2) |
| 5 |
9604 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot