NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,963.5 |
| Mean read quality |
11.5 |
| Median read length |
4,176.0 |
| Median read quality |
13.0 |
| Number of reads |
106,542.0 |
| Read length N50 |
4,827.0 |
| STDEV read length |
1,309.1 |
| Total bases |
422,282,672.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
106398 (99.9%) 421.9Mb |
| >Q7 |
104604 (98.2%) 416.4Mb |
| >Q10 |
93693 (87.9%) 377.6Mb |
| >Q12 |
72746 (68.3%) 299.1Mb |
| >Q15 |
5145 (4.8%) 22.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (374) |
| 2 |
17.2 (5182) |
| 3 |
17.1 (3817) |
| 4 |
17.0 (2433) |
| 5 |
17.0 (5163) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10385 (14.0) |
| 2 |
10272 (13.3) |
| 3 |
10234 (13.9) |
| 4 |
10153 (8.7) |
| 5 |
10129 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot