NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,111.2 |
| Mean read quality |
11.6 |
| Median read length |
4,443.0 |
| Median read quality |
12.8 |
| Number of reads |
1,029.0 |
| Read length N50 |
4,833.0 |
| STDEV read length |
1,641.2 |
| Total bases |
4,230,451.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1029 (100.0%) 4.2Mb |
| >Q7 |
1028 (99.9%) 4.2Mb |
| >Q10 |
893 (86.8%) 3.9Mb |
| >Q12 |
667 (64.8%) 3.0Mb |
| >Q15 |
60 (5.8%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (3548) |
| 2 |
16.0 (5358) |
| 3 |
15.9 (5692) |
| 4 |
15.9 (4292) |
| 5 |
15.9 (5360) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10568 (10.9) |
| 2 |
10001 (11.6) |
| 3 |
8800 (8.7) |
| 4 |
8360 (12.2) |
| 5 |
7668 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot