NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,743.9 |
| Mean read quality |
11.0 |
| Median read length |
3,756.5 |
| Median read quality |
12.5 |
| Number of reads |
1,204.0 |
| Read length N50 |
4,345.0 |
| STDEV read length |
1,580.4 |
| Total bases |
4,507,618.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1204 (100.0%) 4.5Mb |
| >Q7 |
1198 (99.5%) 4.5Mb |
| >Q10 |
1004 (83.4%) 4.0Mb |
| >Q12 |
710 (59.0%) 2.9Mb |
| >Q15 |
19 (1.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (4280) |
| 2 |
16.7 (2246) |
| 3 |
16.5 (2752) |
| 4 |
16.4 (2916) |
| 5 |
16.3 (3993) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8251 (12.8) |
| 2 |
7774 (14.1) |
| 3 |
7689 (9.6) |
| 4 |
7462 (11.7) |
| 5 |
7265 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot