NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,129.1 |
| Mean read quality |
11.0 |
| Median read length |
3,081.0 |
| Median read quality |
12.4 |
| Number of reads |
10,372.0 |
| Read length N50 |
3,523.0 |
| STDEV read length |
1,270.5 |
| Total bases |
32,455,420.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10372 (100.0%) 32.5Mb |
| >Q7 |
10372 (100.0%) 32.5Mb |
| >Q10 |
8646 (83.4%) 28.9Mb |
| >Q12 |
5982 (57.7%) 20.3Mb |
| >Q15 |
201 (1.9%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (2732) |
| 2 |
16.5 (5131) |
| 3 |
16.4 (2418) |
| 4 |
16.4 (6207) |
| 5 |
16.2 (2216) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10019 (10.8) |
| 2 |
9291 (12.0) |
| 3 |
9106 (8.0) |
| 4 |
8432 (9.9) |
| 5 |
8114 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot