NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,334.0 |
| Mean read quality |
11.7 |
| Median read length |
3,236.0 |
| Median read quality |
12.9 |
| Number of reads |
327,027.0 |
| Read length N50 |
3,577.0 |
| STDEV read length |
1,098.7 |
| Total bases |
1,090,323,183.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
327027 (100.0%) 1090.3Mb |
| >Q7 |
326476 (99.8%) 1088.6Mb |
| >Q10 |
293585 (89.8%) 984.2Mb |
| >Q12 |
223182 (68.2%) 754.8Mb |
| >Q15 |
27694 (8.5%) 94.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (2972) |
| 2 |
17.9 (2931) |
| 3 |
17.8 (5477) |
| 4 |
17.8 (2784) |
| 5 |
17.6 (1705) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11600 (13.5) |
| 2 |
10512 (8.3) |
| 3 |
10027 (14.9) |
| 4 |
9873 (11.0) |
| 5 |
9724 (14.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot