NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,440.4 |
| Mean read quality |
11.3 |
| Median read length |
3,340.0 |
| Median read quality |
12.7 |
| Number of reads |
9,569.0 |
| Read length N50 |
3,736.0 |
| STDEV read length |
1,289.1 |
| Total bases |
32,921,420.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9569 (100.0%) 32.9Mb |
| >Q7 |
9524 (99.5%) 32.8Mb |
| >Q10 |
8069 (84.3%) 28.2Mb |
| >Q12 |
5890 (61.6%) 20.8Mb |
| >Q15 |
659 (6.9%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (2257) |
| 2 |
17.1 (3170) |
| 3 |
16.8 (3510) |
| 4 |
16.8 (3231) |
| 5 |
16.7 (1479) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11685 (7.5) |
| 2 |
8969 (13.1) |
| 3 |
8969 (8.6) |
| 4 |
8967 (12.2) |
| 5 |
8961 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot